Screencasts

Interactive tutorials and screencasts

Weblems:

weblem 1.1: NCBI Entrez, NCBI Taxonomy
weblem 1.2: NCBI Taxonomy
weblem 1.4: Genomes
weblem 1.5: Diseases, OMIM

weblem 2.1: GenBank queries
weblem 2.2: PDB, data summarisation
weblem 2.3: Gene-centric querying (RefSeq, Entrez Gene, Ensembl)
weblem 2.4: Ensembl, BioMart
weblem 2.5: Genetic markers, BioMart, Gene Ontologies

weblem 3.1: PAM tables, matrix operations
weblem 3.3: OMIM disease database, OMIM statistics
weblem 3.4: OMIM disease mapping, Ensembl, Gene Ontologies

weblem 4.1: Multiple alignments

weblem 5.1: BLAST, PSI-BLAST

weblem 6.1: Phylogentics on protein, Maximum Parsimony, Bootsrapping, Visualisation
weblem 6.2: Phylogentics on protein, Maximum Parsimony, Bootsrapping, Visualisation
weblem 6.3: Phylogentics on large DNA sequences, Distance Methods, Visualisation

General and databases:

NCBI-nucleotide: NCBI introduction, genebank, file formats
-NCBI-traces:
NCBI traces demonstration (raw sequencing data)
-NCBI-gene: gene-centric queries, RefSeq
-Swissprot: the SwissProt/trEMBL protein database
-PDB: PDB, structural protein data
-PubMed: PubMed, the literature database at NCBI
-Ensembl: the Ensembl website and BioMart, the querying interface

All material is created by Maté Ongenaert @ BioBix, lab. for Bioinformatics and computational genomics
at the Departement of Molecular Biotechnology
Faculty of Bioscience Engineering
Ghent University
Belgium